VU AmsterdamDepartment of physics and astronomy
    Erwin Peterman

   Faculty of SciencesDepartment of physics and astronomy Vrije Universiteit Amsterdam
Home CV Publications People Physics of Complex Systems

Publications
  1. Gross, P., Laurens, N., Oddershede, L., Bockelmann, U., Peterman, E.J.G. & Wuite, G.J.L. Quantifying how DNA stretches, melts and changes twist under tension. Nature Physics, in press.
  2. van den Wildenberg, S., Bollen, Y. J. M. & Peterman, E. J. G. How to Quantify Protein Diffusion in the Bacterial Membrane. Biopolymers 95, 312-321, (2011).
  3. Candelli, A., Wuite, G. J. L. & Peterman, E. J. G. Combining optical trapping, fluorescence microscopy and micro-fluidics for single molecule studies of DNA-protein interactions. Physical Chemistry Chemical Physics 13, 7263-7272, (2011).
  4. Sosa, H., Asenjo, A. B. & Peterman, E. J. G. in Methods in Cell Biology, Vol 95 Vol. 95    505-519 (2010).
  5. Raghunathan, S. B., van Dijk, T., Peterman, E. J. G. & Visser, T. D. Experimental demonstration of an intensity minimum at the focus of a laser beam created by spatial coherence: application to the optical trapping of dielectric particles. Optics Letters 35, 4166-4168, (2010).
  6. Peterman, E. J. G. & Gross, P. Biophysics of DNA-ligand interactions resolved by force Comment on "Biophysical characterization of DNA binding from single molecule force measurements" by KR Chaurasiya et al. Physics of Life Reviews 7, 344-345, (2010).
  7. Lakämper, S., Thiede, C., Düselder, A., Reiter, S., Korneev, M. J., Kapitein, L. C., Peterman, E. J. G. & Schmidt, C. F. The Effect of Monastrol on the Processive Motility of a Dimeric Kinesin-5 Head/Kinesin-1 Stalk Chimera. J Mol Biol 399, 1-8, (2010).
  8. Gross, P., Farge, G., Peterman, E. J. G. & Wuite, G. J. L. in Methods in Enzymology, Vol 475: Single Molecule Tools, Pt B Vol. 474    427-453 (2010).
  9. Witte, S., Baclayon, M., Peterman, E. J., Toonen, R. F., Mansvelder, H. D. & Groot, M. L. Single-shot two-dimensional full-range optical coherence tomography achieved by dispersion control. Opt Express 17, 11335-11349, (2009).
  10. Verbrugge, S., van den Wildenberg, S. M. & Peterman, E. J. Novel ways to determine kinesin-1's run length and randomness using fluorescence microscopy. Biophys J 97, 2287-2294, (2009).
  11. Verbrugge, S., Lechner, B., Woehlke, G. & Peterman, E. J. Alternating-Site Mechanism of Kinesin-1 Characterized by Single-Molecule FRET Using Fluorescent ATP Analogues. Biophys J 97, 173-182, (2009).
  12. Verbrugge, S., Lansky, Z. & Peterman, E. J. Kinesin's step dissected with single-motor FRET. Proc Natl Acad Sci U S A 106, 17741-17746, (2009).
  13. van Mameren, J., Modesti, M., Kanaar, R., Wyman, C., Peterman, E. J. & Wuite, G. J. Counting RAD51 proteins disassembling from nucleoprotein filaments under tension. Nature 457, 745-748, (2009).
  14. van Mameren, J., Gross, P., Farge, G., Hooijman, P., Modesti, M., Falkenberg, M., Wuite, G. J. & Peterman, E. J. Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging. Proc Natl Acad Sci U S A 106, 18231-18236, (2009).
  15. Peterman, E. J. G. & Scholey, J. M. Mitotic Microtubule Crosslinkers: Insights from Mechanistic Studies. Curr Biol 19, R1089-R1094, (2009).
  16. Calmat, S., Hendriks, J., van Heerikhuizen, H., Schmidt, C. F., van der Vies, S. M. & Peterman, E. J. G. Dissociation Kinetics of the GroEL-gp31 Chaperonin Complex Studied with Forster Resonance Energy Transfer. Biochemistry 48, 11692-11698, (2009).
  17. van Mameren, J., Peterman, E. J. G. & Wuite, G. J. L. See me, feel me: methods to concurrently visualize and manipulate single DNA molecules and associated proteins. Nucleic Acids Res 36, 4381-4389, (2008).
  18. van den Wildenberg, S. M., Tao, L., Kapitein, L. C., Schmidt, C. F., Scholey, J. M. & Peterman, E. J. The homotetrameric kinesin-5 KLP61F preferentially crosslinks microtubules into antiparallel orientations. Curr Biol 18, 1860-1864, (2008).
  19. Kapitein, L. C., Kwok, B. H., Weinger, J. S., Schmidt, C. F., Kapoor, T. M. & Peterman, E. J. G. Microtubule cross-linking triggers the directional motility of kinesin-5. J Cell Biol 182, 421-428, (2008).
  20. Kapitein, L. C., Janson, M. E., van den Wildenberg, S. M. J. L., Hoogenraad, C. C., Schmidt, C. F. & Peterman, E. J. G. Microtubule-Driven Multimerization Recruits ase1p onto Overlapping Microtubules. Curr Biol 18, 1713-1717, (2008).
  21. Verbrugge, S., Kapitein, L. C. & Peterman, E. J. Kinesin moving through the spotlight: single-motor fluorescence microscopy with submillisecond time resolution. Biophys J 92, 2536-2545, (2007).
  22. Modesti, M., Ristic, D., van der Heijden, T., Dekker, C., van Mameren, J., Peterman, E. J., Wuite, G. J., Kanaar, R. & Wyman, C. Fluorescent human RAD51 reveals multiple nucleation sites and filament segments tightly associated along a single DNA molecule. Structure 15, 599-609, (2007).
  23. Vermeulen, K. C., van Mameren, J., Stienen, G. J. M., Peterman, E. J. G., Wuite, G. J. L. & Schmidt, C. F. Calibrating bead displacements in optical tweezers using acousto-optic deflectors. Rev Sci Instr 77, (2006).
  24. Mameren, J., Modesti, M., Kanaar, R., Wyman, C., Wuite, G. J. & Peterman, E. J. Dissecting elastic heterogeneity along DNA molecules coated partly with Rad51 using concurrent fluorescence microscopy and optical tweezers. Biophys J 91, L78-80, (2006).
  25. Kwok, B. H., Kapitein, L. C., Kim, J. H., Peterman, E. J. G., Schmidt, C. F. & Kapoor, T. M. Allosteric inhibition of kinesin-5 modulates its processive directional motility. Nat Chem Biol 2, 480-485, (2006).
  26. Berg-Sorensen, K., Peterman, E. J. G., Weber, T., Schmidt, C. F. & Flyvbjerg, H. Power spectrum analysis for optical tweezers. II: Laser wavelength dependence of parasitic filtering, and how to achieve high bandwidth. Rev Sci Instr 77, (2006).
  27. Kapitein, L. C., Peterman, E. J. G., Kwok, B. H., Kim, J. H., Kapoor, T. M. & Schmidt, C. F. The bipolar mitotic kinesin Eg5 moves on both microtubules that it crosslinks. Nature 435, 114-118, (2005).
  28. van Dijk, M. A., Kapitein, L. C., van Mameren, J., Schmidt, C. F. & Peterman, E. J. G. Combining optical trapping and single-molecule fluorescence spectroscopy: Enhanced photobleaching of fluorophores. J Phys Chem B 108, 6479-6484, (2004).
  29. Peterman, E. J. G., Sosa, H. & Moerner, W. E. Single-molecule fluorescence spectroscopy and microscopy of biomolecular motors. Annu Rev Phys Chem 55, 79-96, (2004).
  30. Peterman, E. J. G., van Dijk, M. A., Kapitein, L. C. & Schmidt, C. F. Extending the bandwidth of optical-tweezers interferometry. Rev Sci Instr 74, 3246-3249, (2003).
  31. Peterman, E. J. G., Gittes, F. & Schmidt, C. F. Laser-induced heating in optical traps. Biophys J 84, 1308-1316, (2003).
  32. Sosa, H., Peterman, E. J. G., Moerner, W. E. & Goldstein, L. S. B. ADP-induced rocking of the kinesin motor domain revealed by single-molecule fluorescence polarization microscopy. Nat Struct Biol 8, 540-544, (2001).
  33. Peterman, E. J. G., Sosa, H., Goldstein, L. S. B. & Moerner, W. E. Polarized fluorescence microscopy of individual and many kinesin motors bound to axonemal microtubules. Biophys J 81, 2851-2863, (2001).
  34. Pascal, A., Peterman, E., Gradinaru, C., van Amerongen, H., van Grondelle, R. & Robert, B. Structure and interactions of the chlorophyll a molecules in the higher plant Lhcb4 antenna protein. J Phys Chem B 104, 9317-9321, (2000).
  35. Kleima, F. J., Wendling, M., Hofmann, E., Peterman, E. J. G., van Grondelle, R. & van Amerongen, H. Peridinin chlorophyll a protein: Relating structure and steady-state spectroscopy. Biochemistry 39, 5184-5195, (2000).
  36. Brasselet, S., Peterman, E. J. G., Miyawaki, A. & Moerner, W. E. Single-molecule fluorescence resonant energy transfer in calcium concentration dependent cameleon. J Phys Chem B 104, 3676-3682, (2000).
  37. Peterman, E. J. G., Brasselet, S. & Moerner, W. E. The fluorescence dynamics of single molecules of green fluorescent protein. J Phys Chem A 103, 10553-10560, (1999).
  38. Pascal, A., Gradinaru, C., Wacker, U., Peterman, E., Calkoen, F., Irrgang, K. D., Horton, P., Renger, G., van Grondelle, R., Robert, B. & van Amerongen, H. Spectroscopic characterization of the spinach Lhcb4 protein (CP29), a minor light-harvesting complex of photosystem II. Eur J Biophys 262, 817-823, (1999).
  39. Moerner, W. E., Peterman, E. J. G., Brasselet, S., Kummer, S. & Dickson, R. M. Optical methods for exploring dynamics of single copies of green fluorescent protein. Cytometry 36, 232-238, (1999).
  40. Kleima, F. J., Hobe, S., Calkoen, F., Urbanus, M. L., Peterman, E. J. G., van Grondelle, R., Paulsen, H. & van Amerongen, H. Decreasing the chlorophyll a/b ratio in reconstituted LHCII: Structural and functional consequences. Biochemistry 38, 6587-6596, (1999).
  41. Groot, M. L., Frese, R. N., de Weerd, F. L., Bromek, K., Pettersson, A., Peterman, E. J. G., van Stokkum, I. H. M., van Grondelle, R. & Dekker, J. P. Spectroscopic properties of the CP43 core antenna protein of photosystem II. Biophys J 77, 3328-3340, (1999).
  42. Peterman, E. J. G., Wenk, S. O., Pullerits, T., Palsson, L. O., van Grondelle, R., Dekker, J. P., Rogner, M. & van Amerongen, H. Fluorescence and absorption spectroscopy of the weakly fluorescent chlorophyll a in cytochrome b(6)f of Synechocystis PCC6803. Biophys J 75, 389-398, (1998).
  43. Peterman, E. J. G., van Amerongen, H., van Grondelle, R. & Dekker, J. P. The nature of the excited state of the reaction center of photosystem II of green plants: A high-resolution fluorescence spectroscopy study. Proc Natl Acad Sci U S A 95, 6128-6133, (1998).
  44. Barzda, V., Peterman, E. J. G., van Grondelle, R. & van Amerongen, H. The influence of aggregation on triplet formation in light-harvesting chlorophyll a/b pigment-protein complex II of green plants. Biochemistry 37, 546-551, (1998).
  45. Peterman, E. J. G., Pullerits, T., vanGrondelle, R. & vanAmerongen, H. Electron-phonon coupling and vibronic fine structure of light-harvesting complex II of green plants: Temperature dependent absorption and high-resolution fluorescence spectroscopy. J Phys Chem B 101, 4448-4457, (1997).
  46. Peterman, E. J. G., Monshouwer, R., vanStokkum, I. H. M., vanGrondelle, R. & vanAmerongen, H. Ultrafast singlet excitation transfer from carotenoids to chlorophylls via different pathways in light-harvesting complex II of higher plants. Chem Phys Lett 264, 279-284, (1997).
  47. Peterman, E. J. G., Gradinaru, C. C., Calkoen, F., Borst, J. C., vanGrondelle, R. & vanAmerongen, H. Xanthophylls in light-harvesting complex II of higher plants: Light harvesting and triplet quenching. Biochemistry 36, 12208-12215, (1997).
  48. Peterman, E. J. G., Hobe, S., Calkoen, F., vanGrondelle, R., Paulsen, H. & vanAmerongen, H. Low-temperature spectroscopy of monomeric and trimeric forms of reconstituted light-harvesting chlorophyll a/b complex. Biochim Biophys Acta Bioen 1273, 171-174, (1996).
  49. Peterman, E. J. G., Dukker, F. M., vanGrondelle, R. & vanAmerongen, H. Chlorophyll a and carotenoid triplet states in light-harvesting complex II of higher plants. Biophys J 69, 2670-2678, (1995).
  50. Groot, M. L., Peterman, E. J. G., Vanstokkum, I. H. M., Dekker, J. P. & Vangrondelle, R. Triplet and Fluorescing States of the Cp47 Antenna Complex of Photosystem-Ii Studied as a Function of Temperature. Biophys J 68, 281-290, (1995).
  51. Groot, M. L., Peterman, E. J. G., Vankan, P. J. M., Vanstokkum, I. H. M., Dekker, J. P. & Vangrondelle, R. Temperature-Dependent Triplet and Fluorescence Quantum Yields of the Photosystem-Ii Reaction-Center Described in a Thermodynamic Model. Biophys J 67, 318-330, (1994).
Publications in popular press
  1. Prevo, B., and E. J. G. Peterman. 2010. Individuele motoreiwitten belicht met lasers. Nederlands Tijdscrhift voor Natuurkunde 76:206-208.
     
               
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