Peer-reviewed Journals

Damodaran, M., Vienola, K. V., Braaf, B., Vermeer, K. A., & de Boer, J. F. (2017). Digital micromirror device based ophthalmoscope with concentric circle scanning. Biomedical Optics Express, 8(5), 2766.

De Boer, J. F. (2016). Quantitative flow assessments with OCT Angiography. Investigative Ophthalmology and Visual Science, 57(12). DOI: 10.1117/1.JBO.21.6.066008

Damodaran, M., Vienola, K. V., Braaf, B., & de Boer, J. F. (2016). Multispectral Scanning Light Ophthalmoscope (MSLO) using optimized illumination schemes. In The Association for Research in Vision and Ophthalmology (12 ed., Vol. 57, pp. 1697)

Nadyarnykh, O., Moll, A. C., & De Boer, J. F. (2016). 3D diagnostic imaging of retinoblastoma with a novel optical coherence tomography clinical system. Investigative Ophthalmology and Visual Science, 57(12).

Teo, J. C., Foin, N., Otsuka, F., Bulluck, H., Fam, J. M., Wong, P., ... Boer, J. F. D. (2016). Optimization of coronary optical coherence tomography imaging using the attenuation-compensated technique: a validation study. European heart journal cardiovascular Imaging, 2(3), 1035-46. DOI: 10.1093/ehjci/jew153

Tsikata, E., Lee, R., Shieh, E., Simavli, H., Que, C. J., Guo, R., ... Chen, T. C. (2016). Comprehensive three-dimensional analysis of the neuroretinal rim in glaucoma using high-density spectral-domain optical coherence tomography volume scans. Investigative ophthalmology & visual science, 57(13), 5498-5508. DOI: 10.1167/iovs.16-19802

Van Velthoven, M. E. J., de Jong, J. H., Braaf, B., Gräfe, M. G. O., Amarakoon, S., Vermeer, K. A., ... De Boer, J. F. (2016). Monitoring treatment of retinal angiomatous proliferation by phase resolved Doppler OCT. Investigative Ophthalmology and Visual Science, 57(12).

S. Amarakoon, J.H. de Jong, B. Braaf, S. Yzer, T. Missotten, M.E.J. van Velthoven, J.F. de Boer, " Phase-Resolved Doppler Optical Coherence Tomographic Features in Retinal Angiomatous Proliferation " American Journal of Ophthalmology 160 (5), 1044-1054 (2015)

Elsbeth J. T. van Zeeburg, Boy Braaf, Matteo G. Cereda, Jan C. van Meurs, and Johannes F. de Boer, “Direct Blood Flow Measurements in a Free RPE-Choroid Graft with Phase-Resolved Doppler OCT.” Trans. Vis. Sci. Tech. 4 (1), 1-9 (2015). 

Ghafaryasl, B., Novosel, J., Lemij, H. G., de Boer, J. F., Vermeer, K. A., & van Vliet, L. J. (2015). Automatic estimation of retinal nerve fiber bundle orientation in SD-OCT images. Investigative Ophthalmology and Visual Science, 56(7), 4556.

Grafe, M. G. O., Wilk, L. S., Braaf, B., Novosel, J., Vermeer, K. A., & de Boer, J. F. (2015). Quantification of retinal blood flow in swept-source Doppler OCT. Investigative Ophthalmology and Visual Science, 56(7), 5948.

Henry, F. P., Wang, Y., Rodriguez, C. L. R., Randolph, M. A., Rust, E. A. Z., Winograd, J. M., ... Park, B. H. (2015). In vivo optical microscopy of peripheral nerve myelination with polarization sensitive-optical coherence tomography. Journal of Biomedical Optics, 20(4), 046002. DOI: 10.1117/1.JBO.20.4.046002

Jianan Li, Fabio Feroldi, Joop de Lange, Johannes M. A. Daniels, Katrien Grünberg, and Johannes F. de Boer, " Polarization sensitive optical frequency domain imaging system for endobronchial imaging", Optics Express 23 (3), 3390–3402 (2015) 

Liu, Y. N., Simavli, H., Que, C., Akduman, M., Rizzo, J., Tsikata, E., ... Chen, T. C. (2015). Comparison of peripapillary retinal thickness (RT) with retinal nerve fiber layer (RNFL) thickness measurements for diagnostic capability and artifact rates. Investigative Ophthalmology and Visual Science, 56(7), 4561.

M.J.B. Moester, F. Ariese, J.F. de Boer, “Optimized signal-to-noise ratio with shot noise limited detection in Stimulated Raman Scattering microscopy”, J. Eur. Opt. Soc. -Rapid, 10, 15022 (2015) 

Jianhua Mo, Mattijs de Groot, and Johannes F. de Boer," Depth-encoded synthetic aperture optical coherence tomography of biological tissues with extended focal depth" Optics Express, 23 (4), 4935-4945 (2015) 

Novosel, J., Thepass, G., Lemij, H.G., de Boer, J.F., Vermeer, K.A., van Vliet, L.J, “Loosely coupled level sets for simultaneous 3D retinal layer segmentation in optical coherence tomography” Medical Image Analysis 26 (1), 146–158 (2015) 

Simavli, H., Que, C. J., Akduman, M., Rizzo, J., Tsikata, E., & de Boer, J. F. (2015). Diagnostic Capability of Peripapillary Retinal Thickness in Glaucoma Using 3D Volume Scans. American Journal of Ophthalmology, 159(3), 545-556. DOI: 10.1016/j.ajo.2014.12.004

K.V. Vienola, M. Damodaran, B. Braaf, K.A. Vermeer, J.F. de Boer, "Parallel line scanning ophthalmoscope for retinal imaging" Optics Letters 40 (22) 5335-5338 (2015)

Wu, H., de Boer, J. F., & Chen, L. (2015). Correlation of localized glaucomatous visual field defects and spectral domain optical coherence tomography retinal nerve fiber layer thinning using a modified structure-function map for OCT. Eye, 59(4), 525-533. DOI: 10.1038/eye.2014.317

J. Li, J.F. de Boer,  “Coherent signal composition and global phase determination in signal multiplexed polarization sensitive optical coherence tomography”, Optics Express 22 (18), 21382-21392 (2014) 

B. Braaf, K.A. Vermeer, M. de Groot, K.V. Vienola, J.F. de Boer, “Fiber-based polarization-sensitive OCT of the human retina with correction of system polarization distortions”, Biomedical Optics Express 5 (8), 2736-2758 (2014) 

K.A. Vermeer, J. Mo, J.J.A. Weda, H.G. Lemij, J.F. de Boer, “Depth-resolved model-based reconstruction of attenuation coefficients in optical coherence tomography”, Biomedical Optics Express, 5 (1), 322-337 (2014) 

D. Chavan, J. Mo, M. de Groot, A. Meijering, J.F. de Boer, D. Iannuzzi, "Collecting optical coherence elastography depth profiles with a micromachined cantilever probe", Optics Letters, 38, 1476-1478 (2013) 

J. Mo, M. de Groot, J.F. de Boer, "Focus-extension by depth-encoded synthetic aperture in Optical Coherence Tomography", Optics Express, 21, 10048-10061 (2013) 

F. Helderman, B. Haslam, J. F. de Boer, and M. de Groot, “Three-dimensional intracellular optical phase imaging” Optics Letters, 38, 431-433 (2013) 

B. Braaf, K. V. Vienola, C. K. Sheehy,Q. Yang, K. A. Vermeer, P. Tiruveedhula, D. W. Arathorn,.A. Roorda, J. F. de Boer, “Real-time eye motion correction in phase-resolved OCT angiography with tracking SLO” Biomedical Optics Express, 4, 51-65 (2013). 

J. Li, M. de Groot, F. Helderman, J. Mo, J.M.A. Daniels, K. Grünberg, T. G. Sutedja, J. F. de Boer, “High speed miniature motorized endoscopic probe for optical frequency domain imaging”, Optics Express, 20, 24132-24138 (2012) 

K.A. Vermeer, J van der Schoot, H.G. Lemij, J.F. de Boer, "RPE-Normalized RNFL attenuation coefficient maps derived from volumetric OCT imaging for glaucoma assesment", Investigative Ophthalmology and Visual Science 53 (10), 6102 - 6108 (2012) 

K.V. Vienola, B. Braaf, C. K. Sheehy, Q. Yang, P. Tiruveedhula, D. W. Arathorn, J. F. de Boer, A. Roorda, “Real-time eye motion compensation for OCT imaging with tracking SLO”, Biomedical Optics Express, 3,.2950-2963 (2012) 

C.K. Sheehy, Q. Yang, D. W. Arathorn, P. Tiruveedhula, J. F. de Boer, A. Roorda, “High-speed, image-based eye tracking with a scanning laser ophthalmoscope”, Biomedical Optics Express, 3, 2611-2622 (2012). 

B. Braaf, K.A. Vermeer, K.V. Vienola, J.F. de Boer, “Angiography of the retina and the choroid with phase-resolved OCT using interval-optimized backstitched B-scans”, Optics Express, 20, 20516-20534 (2012) 

M. de Groot, C. L. Evans, and J. F. de Boer, “Self-interference fluorescence microscopy: three dimensional fluorescence imaging without depth scanning,” Optics Express, 20 15253-15262 (2012) 

D.A. Heuveling, G.W.M Visser, M. de Groot, J.F. de Boer, M. Baclayon, W.H. Roos, G.J.L Wuite, C.R. Leemans, R. de Bree, G.A.M.S. van Dongen, “Nanocolloidal albumin-IRDye 800CW: a near-infrared fluorescent tracer with optimal retention in the sentinel lymph node,” European Journal of Nuclear Medicine and Molecular Imaging 39 1161-1168 (2012) 

J. van der Schoot, K. A. Vermeer, J. F. de Boer, H. G. Lemij, “The Effect of Glaucoma on the Optical Attenuation Coefficient of the Retinal Nerve Fiber Layer in Spectral Domain Optical Coherence Tomography Images,” Invest. Ophthalmology and Visual Science 53, 2424-2430 (2012) 

B. Braaf, K.A. Vermeer, V.A.D.P. Sicam, E. van Zeeburg, J.C. van Meurs, and J.F. de Boer, "Phase-stabilized optical frequency domain imaging at 1-µm for the measurement of blood flow in the human choroid," Opt. Express 19, 20886-20903 (2011). 

K. A. Vermeer, J. van der Schoot, H. G. Lemij, H G; J. F. de Boer, “Automated segmentation by pixel classification of retinal layers in ophthalmic OCT images”, Biomedical Optics Express 2 (6) 1743-56, 2011 10.1364/BOE.2.001743 

T Hillenaar, VADP Sicam, KA Vermeer, B Braaf, L Remeijer, RHH Cals, JF de Boer. “Wide range calibration of corneal backscatter analysis by in vivo confocal microscopy.” Invest Ophthalmol Vis Sci. 52(5), 2136-2146. 2011.


Selected earlier publications from Johannes F. de Boer

-   B. Cense,  N. A. Nassif,  T. C. Chen,  M. C. Pierce,  S. Yun,  B. H. Park,  B. E. Bouma,  G. J. Tearney, and J. F. de Boer, "Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography," Opt. Express 12, 2435-2447 (2004)

-   N. A. Nassif, B. Cense, B. H. Park,  M. C. Pierce, S. H. Yun, B. E. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, "In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve," Opt. Express 12, 367-376 (2004)

-   S. H. Yun, G. J. Tearney, B. E. Bouma, B. H. Park, and J. F. de Boer, “High-speed spectral-domain optical coherence tomography at 1.3 um wavelength.” Optics Express 11 (26), 3598-3604 (2003)

-   B. R. White,  M. C. Pierce,  N. Nassif,  B. Cense,  B. H. Park,  G. J. Tearney,  B. E. Bouma,  T. C. Chen, and J. F. de Boer, "In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography," Opt. Express 11 (25), 3490-3497 (2003)

-   S. H. Yun, G. J. Tearney, J. F. de Boer, N. Iftimia, and B. E. Bouma, "High-speed optical frequency-domain imaging," Opt. Express 11, 2953-2963 (2003)

-   J. F. de Boer, B. Cense, B. H. Park, M.C. Pierce, G. T. Tearney, B.E. Bouma, “Improved signal to noise ratio in spectral domain compared with time domain optical coherence tomography.” Opt. Lett. (21) 28, 2067-2069 (2003)

-   J. F. de Boer and T. E. Milner, “Review of Polarization Sensitive Optical Coherence Tomography and Stokes Vector Determination”, Journal of Biomedical Optics 7 (3), 359-371 (2002)

-   Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer and J. S. Nelson. Phase resolved Optical Coherence Tomography and Optical Doppler Tomography for imaging blood flow in human skin with fast-scanning speed and high velocity sensitivity. Optics Letters 24: 114-116 (2000)

-   J. F. de Boer, T. E. Milner, M. J. C. van Gemert, J. S. Nelson. Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography. Optics Lett. 22: 934-936 (1997)


A full list of publications for Prof.dr. Johannes F. de Boer can be found here: