3. Data analysis
Fluorescence spectra

Fluorescence spectra that are recorded you can e-mail to yourself. The text file that you will then receive contains in the first column  the wavelengths of the fluorescence spectrum measured, and in the second column showed the relative intensities of the fluorescence (in arbitrary units). Processing of this data can be done in any data analysis software (e.g. Origin, Igor, R or even Excel is you wish).

A simple fitting application is also available (for advanced eror analysis you will need to use data analysis software). The  fitting application allows you to fit the spectra with Gaussian functions to discriminate between the two photosystems, and one can derive the peak positions, maxima values and the full-width-at-half-maximum (FWHM) of these Gaussians.
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Time spectra

Similarly, time spectra that are recorded you can e-mail to yourself. The text file is build up similarly as well: columns with time and total intensity for the two wavelength regions selected. Again advanced error analysis will require data analysis software.

The simple fitting application available always you to perform exponential fits on the time traces, and one can determine tau, the amplitude and steady-state value of fluorescence, and the mean-squared error (mse). The residue of the exponential fit is also given.

Software

The simple data analysis application available is a LabVIEW application. which requires the LabVIEW run time engine 2012 (32-bit) (LV rte 2012). You need to download and install the LV rte 2012 prior to launcing the simple data analysis application. The LV rte 2012 is available for free from National Instruments for Windows.

The simple data analysis application can be downloaded as a ZIP file. When you unzip the file a folder called LRS data analysis will be put on your hard disk. This folder contains the executable  LRS Data Analyser.exe.