Publications 2012

Berera, R., Stokkum, I.H.M. van, Gwizdala, M.S., Wilson, A., Kirilovsky, D. & Grondelle, R. van (2012). The photophysics of the Orange Carotenoid Protein, a light-powered molecular switch. Journal of Physical Chemistry B, 116, 2568-2574.

Curutchet, C., Novoderezhkin, V.I., Kongsted, J., Munoz-Losa, A., Grondelle, R. van, Scholes, G.D. & Menucci, B. (2012). Energy Flow in the Cryptophyte PE545 Antenna is Directed by Bilin Pigment Conformation. Journal of Physical Chemistry B.

Denisov, D.V., Villanueva, Y. Y., Lorincz-Nagy, K., May, S. & Wijngaarden, R.J. (2012). Relation between self-organized criticality and grain aspect ratio in granular piles. Physical Review E, 85(5).

Hogewoning, S.W., Wientjes, I.E., Douwstra, P., Trouwborst, G., Iperen, W. van, Croce, R. & Harbinson, J. (2012). Photosynthetic Quantum Yield Dynamics: from Photosystems to Leaves. The Plant Cell.

Kloz, M., Grondelle, R. van & Kennis, J.T.M. (2012). Correction for the time dependent inner filter effect caused by transient absorption in femtosecond stimulated Raman experiment. Chemical Physics Letters, 103.

Kloz, M., Pillai, S., Kodis, G., Gust, D., Moore, T.A., Moore, A.L., Grondelle, R. van & Kennis, J.T.M. (2012). New light-harvesting roles of hot and forbidden carotenoid states in artificial photosynthetic constructs. Chemical Science.

Kouril, R., Dekker, J.P. & Boekema, E.J. (2012). Supramolecular organization of photosystem II in green plants. Biochimica et Biophysica Acta. Biomembranes, 1817, 2-12.

Kruger, T.P.J., Ilioaia, C., Johnson, M.P., Ruban, A.V., Papagiannakis, E., Horton, P. & Grondelle, R. van (2012). Controlled Disorder in Plant Light-Harvesting Complex II Explains Its Photoprotective Role. Biophysical Journal, 102, 269-276.

Kruger, T.P.J., Ilioaia, C., Valkunas, L. & Grondelle, R. van (2012). Fluorescence Intermittency from the Main Plant Light-Harvesting Complex: Sensitivity to the Local Environment. Journal of Physical Chemistry B, 116(47), 13939-13939.

Laptenok, S., Stokkum, I.H.M. van, Borst, J.W., Oort, B. van, Visser, A.J.W.G. & Amerongen, H. van (2012). Disentangling picosecond events that complicate the quantitative use of the calcium sensor YC3.60. Journal of Physical Chemistry B, 116(9), 3013-3020.

Liao, P.N., Pillai, S., Kloz, M., Gust, D., Moore, A.L., Moore, T.A., Kennis, J.T.M., Grondelle, R. van & Walla, P.J. (2012). On the role of excitonic interactions in carotenoid--phthalocyanine dyads and implications for photosynthetic regulation. Photosynthesis Research, 111(1), 237-247.

Luck, M., Mathes, T., Bruun, S., Fudim, R., Hagedorn, R., Tra, M.T.N., Kateriya, S., Kennis, J.T.M., Hildebrandt, P. & Hegemannn, P. (2012). A Photochromic Histidine Kinase Rhodopsin (HKR1) That Is Bimodally Switched by Ultraviolet and Blue Light. Journal of Biological Chemistry, 287(47).

Marin, A. (2012, April 18). Energy transport pathways in photosynthetic antennas. VU Vrije Universiteit. Prom./coprom.: prof. dr. R. van Grondelle.

Marin, A., Stokkum, I.H.M. van, Novoderezhkin, V.I. & Grondelle, R. van (2012). Excitation-induced polarization decay in the plant light-harvesting complex LHCII. Journal of Photochemistry and Photobiology A. Chemistry, 234, 91-99.

Mathes, T., Zhu, J., Stokkum, I.H.M. van, Groot, M.L., Hegemann, P. & Kennis, J.T.M. (2012). Hydrogen Bond Switching among Flavin and Amino Acids Determines the Nature of Proton-Coupled Electron Transfer in BLUF Photoreceptors. Journal of Physical Chemistry Letters, 3(2), 203-208.

Mathes, T., Stokkum, I.H.M. van, Stierl, M. & Kennis, J.T.M. (2012). Redox modulation of flavin and tyrosine determines photoinduced proton-coupled electron transfer and photoactivation of BLUF photoreceptors. Journal of Biological Chemistry, 287, 31725-31738.

Oort, B.F. van, Veer, M.J.T. ter, Groot, M.L. & Stokkum, I.H.M. van (2012). Excited state proton transfer in strongly enhanced GFP (sGFP2). Physical Chemistry Chemical Physics - PCCP, 14(25), 8852-8858.

Romero Mesa, E., Diner, B.A., Nixon, P.J., Coleman, W.J., Dekker, J.P. & Grondelle, R. van (2012). Mixed exciton–charge-transfer states in photosystem II: Stark spectroscopy on site–directed mutants. Biophysical Journal, 103(2), 185-194.

Snellenburg, J.J., Laptenok, S., Seger, R., Mullen, K.M. & Stokkum, I.H.M. van (2012). Glotaran: A Java-Based Graphical User Interface for the R Package TIMP. Journal of Statistical Software, 49(3), 1-22.

Stahl, A.D., Crouch, L.I., Jones, M.R., Stokkum, I.H.M. van, Grondelle, R. van & Groot, M.L. (2012). Role of PufX in Photochemical Charge Separation in the RC-LH1 Complex from Rhodobacter sphaeroides: An Ultrafast Mid-IR Pump-Probe Investigation. Journal of Physical Chemistry B, 116(1), 434-444.

Sytina, O., Stokkum, I.H.M. van, Heyes, D.J., Hunter, C.N. & Groot, M.L. (2012). Spectroscopic characterization of the first ultrafast catalytic intermediate in protochlorophyllide oxidoreductase. Physical Chemistry Chemical Physics - PCCP, 14(2), 616-625.

Valkunas, L., Chmeliov, J., Kruger, T.P.J., Ilioaia, C. & Grondelle, R. van (2012). How Photosynthetic Proteins Switch. Journal of Physical Chemistry Letters, 3(19), 2779-2784.

Wahadoszamen, M.D., Berera, R., Ara, A.M., Romero Mesa, E. & Grondelle, R. van (2012). Identification of two emitting sites in the dissipative state of the major light harvesting antenna. Physical Chemistry Chemical Physics - PCCP, 14(2), 759-766.

Wientjes, I.E., Roest, G.J. & Croce, R. (2012). From blue to red to far-red in Lhca4: how does the protein modulate the spectral properties of the pigments? Biochimica et Biophysica Acta. Bioenergetics, 1817, 711-717.

Wientjes, I.E. & Croce, R. (2012). Photosystem I electron donor or fluorescence quencher. Photosynthesis Research, 111, 185-191.

Witte, S.M., Kuzmin, N.V., Negrean, A., Lodder, J.C., Testa-Silva, G., Kock, C.P.J. de, Mansvelder, H.D. & Groot, M.L. (2012). Third-Harmonic Generation Microscopy For Label-Free Brain Imaging. In Biomedical Optics, OSA Technical Digest (pp. BSu4B.4). Optical Society of America.

Witte, S.M., Plauska, A., Ridder, M.C., Berge, L. van, Mansvelder, H.D. & Groot, M.L. (2012). Short-coherence off-axis holographic phase microscopy of live cell dynamics. Biomedical Optics Express, 3(9), 2184-2189.

Zhu, J., Mathes, T., Stahl, A.D., Kennis, J.T.M. & Groot, M.L. (2012). Ultrafast mid-infrared spectroscopy by chirped pulse upconversion in 1800-1000cm(-1) region. Optics Express, 20(10), 10562-10571.