Publications 2004

Dissertations 2004

Emmanouil Papagiannakis
Shedding light on the dark states of carotenoids
PhD Advisor prof. dr. R. van Grondelle
Vrije Universiteit Amsterdam, 3 June 2004, PhD Thesis

Publications 2004

D. Abramavicius, L. Valkunas, R. van Grondelle
Exciton dynamics in ring-like photosynthetic light-harvesting complexes: a hopping model
Phys. Chem. Chem. Phys. 6, 2004, p. 3097-3105 [pdf]

E.G. Andrizhiyevskaya, D. Frolov, R. van Grondelle, J.P. Dekker
Energy transfer and trapping in the photosystem I complex of Synechococcus PCC 7942 and in its supercomplex with IsiA
Biochim. Biophys. Acta 1656, 2004, p. 104-113 [pdf]

E.G. Andrizhiyevskaya, D. Frolov, R. van Grondelle, J.P. Dekker
On the role of the CP47 core antenna in the energy transfer and trapping dynamics of Photosystem II
Phys. Chem. Chem. Phys. 6, 2004, p. 4810-4819 [pdf]

S. Bahatyrova, R.N. Frese, C.A. Siebert, J.D. Olsen, K.O. van der Werf, R. van Grondelle, R.A. Niederman, P.A. Bullough, C. Otto, C.N. Hunter
The native architecture of a photosynthetic membrane
Nature 430, 2004, p. 1058-1061 [pdf]

S. Bonsma, J. Gallus, F. Könz, R. Purchase, S. Völker
Light-induced conformational changes and energy transfer in red fluorescent protein
J. Lumin. 107, 2004, p. 203-212 [pdf]

B. Brüggemann, K. Sznee, V. Novoderezhkin, R. van Grondelle, V. May
From structure to dynamics: Modeling exciton dynamics in the photosynthetic antenna PS1
J. Phys. Chem. B 108, 2004, p. 13536-13546 [pdf]

R. Croce, T. Morosinotto, J.A. Ihalainen, A. Chojnicka, J. Breton, J.P. Dekker, R. van Grondelle, R. Bassi
Origin of the 701 nm fluorescence emission of the Lhca2 subunit of higher plant photosystem I
J. Biol. Chem. 279, 2004, p. 48543-48549 [pdf]

R.N. Frese, C.A. Siebert, R.A. Niederman, C.N. Hunter, C. Otto, R. van Grondelle
The long-range organization of a native photosynthetic membrane
Proc. Natl. Acad. Sci. USA 101, 2004, p. 17994-17999 [pdf]

M. Gauden, S. Crosson, I.H.M. van Stokkum, R.van Grondelle, K. Moffat, J.T.M. Kennis
Low-temperature and time-resolved spectroscopic characterization of the LOV2 domain of Avena sativa phototropin
In Femtosecond Laser Applications in Biology (ed. S. Avrillier, J.M. Tualle), Proceedings of SPIE, SPIE Bellingham, WA 5463, 2004, p. 97-104

S. Georgakopoulou, R. van Grondelle, G. van der Zwan
Circular dichroism of carotenoids in bacterial light-harvesting complexes: Experiments and modeling
Biophys. J. 87, 2004, p. 3010-3022 [pdf]

M. Germano, C.C. Gradinaru, A.Ya. Shkuropatov, I.H.M. van Stokkum, V.A. Shuvalov, J.P. Dekker, R. van Grondelle, H.J. van Gorkom
Energy and electron transfer in photosystem II reaction centers with modified pheophytin composition
Biophys. J. 86, 2004, p. 1664-1672 [pdf]

A.O. Goushcha, A.J. Manzo, V.N. Kharkyanen, R. van Grondelle, G.W. Scott
Light-induced equilibration kinetics in membrane-bound photosynthetic reaction centers: Nonlinear dynamic effects in multiple scattering media
J. Phys. Chem. B 108, 2004, p. 2717-2725 [pdf]

M.L. Groot, J. Breton, L.J.G.W. van Wilderen, J.P. Dekker, R. van Grondelle
Femtosecond visible/visible and visible/mid-IR pump-probe study of the photosystem II core antenna complex CP47
J. Phys. Chem. B 108, 2004, p. 8001-8006 [pdf]

J.L. Herek, M. Wendling, Z. He, T.Polívka, G. Garcia-Asua, R.J. Cogdell, C.N. Hunter, R. van Grondelle, V. Sundström, T. Pullerits
Ultrafast carotenoid band shifts: Experiment and theory
J. Phys. Chem. B 108, 2004, p. 10398-10403 [pdf]

N.E. Holt, J.T.M. Kennis, G.R. Fleming
Femtosecond fluorescence upconversion studies of light harvesting by b-carotene in oxygenic photosynthetic core proteins
J. Phys. Chem. B 108, 2004, p. 19029-19035 [pdf]

J.T.M. Kennis, I.H.M. van Stokkum, S. Crosson, M. Gauden, K. Moffat, R. van Grondelle
The LOV2 domain of phototropin: A reversible photochromic switch
J. Am. Chem. Soc. 126, 2004, p. 4512-4513 [pdf]

J.T.M. Kennis, D.S. Larsen, I.H.M. van Stokkum, M. Vengris, J.J. van Thor, R. van Grondelle
Uncovering the hidden ground state of green fluorescent protein
Proc. Natl. Acad. Sci. USA 101, 2004, p. 17988-17993 [pdf]

G. Kodis, C. Herrero, R. Palacios, E. Mariño-Ochoa, S. Gould, L. de la Garza, R. van Grondelle, D. Gust, T.A. Moore, A.L. Moore, J.T.M. Kennis
Light harvesting and photoprotective functions of carotenoids in compact artificial photosynthetic antenna designs
J. Phys. Chem. B 108, 2004, p. 414-425 [pdf]

F. Könz, R. Purchase, S. Bonsma, J. Gallus, S. Völker
Optical dephasing in red fluorescent protein
J. Lumin. 108, 2004, p. 153-157 [pdf]

D.S. Larsen, M. Vengris, I.H.M. van Stokkum, M.A. van der Horst, F.L. de Weerd, K.J. Hellingwerf, R. van Grondelle
Photoisomerization and photoionization of the photoactive yellow protein chromophore in solution
Biophys. J. 86, 2004, p. 2538-2550 [pdf]

D.S. Larsen, I.H.M. van Stokkum, M. Vengris, M.A. van der Horst, F.L. de Weerd, K.J. Hellingwerf, R. van Grondelle
Incoherent manipulation of the photoactive yellow protein photocycle with dispersed pump-dump-probe spectroscopy
Biophys. J. 87, 2004, p. 1858-1872 O.F.A. Larsen, I.H.M. van Stokkum, F.L. de Weerd, M. Vengris, C.T. Aravindakumar, R. van Grondelle, N.E. Geacintov, H. van Amerongen[pdf]

Ultrafast transient-absorption and steady-state fluorescence measurements on 2-aminopurine substituted dinucleotides and 2-aminopurine substituted DNA duplexes[pdf]
Phys. Chem. Chem. Phys. 6, 2004, p. 154-160 F. van Mourik, M.-L. Groot, R. van Grondelle, J.P. Dekker, I.H.M. van Stokkum

Global and target analysis of fluorescence measurements on Photosystem 2 reaction centers upon red excitation
Phys. Chem. Chem. Phys. 6, 2004, p. 4820-4824 V.I. Novoderezhkin, A.G. Yakovlev, R. van Grondelle, V.A. Shuvalov [pdf]

Coherent nuclear and electronic dynamics in primary charge separation in photosynthetic reaction centers: A Redfield theory approach

J. Phys. Chem. B 108, 2004, p. 7445-7457 [pdf]

V.I. Novoderezhkin, M.A. Palacios, H. van Amerongen, R. van Grondelle
Energy-transfer dynamics in the LHCII complex of higher plants: Modified Redfield approach
J. Phys. Chem. B 108, 2004, p. 10363-10375 M.A. Palacios, S. Caffari, R. Bassi, R. van Grondelle, H. van Amerongen[pdf]

 
Stark effect measurements on monomers and trimers of reconstituted light-harvesting complex II of plants
Biochim. Biophys. Acta 1656, 2004, p. 177-188 [pdf]

E. Papagiannakis, D.S. Larsen, I.H.M. van Stokkum, M. Vengris, R.G. Hiller, R. van Grondelle
Resolving the excited state equilibrium of peridinin in solution[pdf]
Biochemistry 43, 2004, p. 15303-15309 L.L. Premvardhan, F. Buda, M.A. van der Horst, D.C. Lührs, K.J. Hellingwerf, R. van Grondelle

L.L. Premvardhan, F. Buda, M.A. van der Horst, D.C. Lührs, K.J. Hellingwerf, R. van Grondelle
Impact of photon absorption on the electronic properties of p-coumaric acid Derivatives of the photoactive yellow protein chromophore
J. Phys. Chem. B 108, 2004, p. 5138-5148 [pdf]

D. Rutkauskas, V. Novoderezkhin, R.J. Cogdell, R. van Grondelle
Fluorescence spectral fluctuations of single LH2 complexes from Rhodopseudomonas acidophila strain 10050
Biochemistry 43, 2004, p. 4431-4438 [pdf]

I.H.M. van Stokkum, D.S. Larsen, R. van Grondelle
Global and target analysis of time-resolved spectra
Biochim. Biophys. Acta 1657, 2004, p. 82-104 [pdf]

M. Vengris, I.H.M. van Stokkum, X. He, A.F. Bell, P.J. Tonge, R. van Grondelle, D.S. Larsen
Ultrafast excited and ground-state dynamics of the green fluorescent protein chromophore in solution
J. Phys. Chem. A 108, 2004, p. 4587-4598 M. Vengris, M.A. van der Horst, G. Zgrablic, I.H.M. van Stokkum, S. Haacke, M. Chergui, K.J. [pdf]

Hellingwerf, R. van Grondelle, D.S. Larsen
Contrasting the excited-state dynamics of the photoactive yellow protein chromophore: Protein versus solvent environments
Biophys. J. 87, 2004, p. 1848-1857 [pdf]

N. Yeremenko, R. Kouril, J.A. Ihalainen, S. D'Haene, N. van Oosterwijk, E.G. Andrizhiyevskaya, W. Keegstra, H.L. Dekker, M. Hagemann, E.J. Boekema, H.C.P. Matthijs, J.P. Dekker
Supramolecular organization and dual function of the IsiA chlorophyll-binding protein in cyanobacteria
Biochemistry 43, 2004, p. 10308-10313 [pdf]