Publications 2009

W.H. Roos, K. Radtke, E. Kniesmeijer, H. Geertsema, B. Sodeik, G.J.L. Wuite
Scaffold expulsion and genome packaging trigger stabilization of Herpes Simplex Virus capsids
Proc. Natl. Acad. Sci. U. S. A.

M. Lomholt, B. van den Broek, S.-M. Kalisch, G.J.L. Wuite, R. Metzler
Facilitated diffusion with DNA coiling
Proc. Natl. Acad. Sci. U. S. A.

J. van Mameren, M. Modesti R. Kanaar, C. Wyman, E.J.G. Peterman, G.J.L. Wuite
Counting RAD51 proteins disassembling from nucleoprotein filaments under tension
Nature 457, 745 - 748 (2009), doi: 1038/nature07581

W.H. Roos, G.J.L. Wuite
Nanoindentation studies reveal material properties of viruses
Advanced Materials  21 (10-11):1187-1192 (2009) doi: 10.1002/adma.200801709

D. Millo, A. Ranieri, P. Gross, H.K. Ly, M. Borsari, P. Hildebrandt, G.J.L. Wuite, C. Gooijer, G. van der Zwan
The electrochemical response of cytochrome c immobilized on smooth and roughened silver and gold surfaces chemically modified with 11-mercaptounodecanoic acid
Journal of Physical Chemistry 113 (7): 2861–2866 (2009)

CP Brangwynne, GH Koenderink, FC MacKintosh, DA Weitz.
Intracellular transport by active diffusion, Trends in Cell Biology, in press (2009).

CP Broedersz, C Storm, FC MacKintosh. Effecive medium approach for stiff polymer networks with flexible cross-links Phys Rev E, in press (2009). also arXiv: 0811.3946.

KE Kasza, GH Koenderink, YC Lin, CP Broedersz, W Messner, F Nakamura, TP Stossel, FC MacKintosh, DA Weitz. Nonlinear elasticity of stiff biopolymers connected by flexible linkers, Phys Rev E, 79: 041928 (2009).

E Conti and FC MacKintosh.
Crosslinked networks of stiff polymers exhibit negative normal stress, Phys Rev Lett, 102: 088102 (2009).
H Kang, Q Wen, PA Janmey, JX Tang, E Conti and FC MacKintosh.
Non-linear elasticity of stiff filament networks: strain stiffening, negative normal stress, and filament alignment in fibrin gels, J Phys Chem, 113: 3799 (2009).

AJ Levine and FC MacKintosh. The mechanics and fluctuation spectrum of active gels J Phys Chem, 113: 3820 (2009).

J. van Mameren, P. Gross, G. Farge, P. Hooijman, M. Modesti, M. Falkenberg, E.J.G Peterman*, G.J.L. Wuite*
Unraveling the structure of DNA during overstretching using multicolor, single-molecule fluorescence imaging
Proc. Natl. Acad. Sci. U. S. A. 106:18231-18236 (2009)
See also: Commentary by Williams et al. in PNAS & in this issue highlight

Metzler R, Koren T, van den Broek B, Wuite GJL, Lomholt MA
And did he search for you, and could not find you?
Journal of Physics A 42(43):434005 (2009)

P.A. Wiggins, R.T. Dame, M.C. Noom, G.J.L. Wuite
Protein mediated bridging motifs: a key mechanism in biopolymer organization
Biophysical Journal 97(7): 1997-2003 (2009)

C. Battle, B. van den Broek, M.C. Noom, J. van Mameren, G.J.L. Wuite, F.C. MacKintosh
Unraveling DNA tori under tension
Physical Review E 80(3): 031917 Part 1 (2009)

A. Arkhipov, W.H. Roos, G.J.L. Wuite, K. Schulten
Elucidating the mechanism behind irreversible deformation of viral capsids
Biophysical Journal 97(7): 2061-2069 (2009)

W.H. Roos, K. Radtke, E. Kniesmeijer, H. Geertsema, B. Sodeik, G.J.L. Wuite
Scaffold expulsion and genome packaging trigger stabilization of Herpes Simplex Virus capsids
Proc. Natl. Acad. Sci. U. S. A. 106:9673-9678 (2009)

N. Laurens, S. Bellamy, A. Harms, Y. Kovacheva, S. Halford, G.J.L. Wuite
Dissecting protein-induced DNA looping dynamics in real time
Nucleic Acids Research   (2009) doi: 10.1093/nar/gkp570

M. Lomholt, B. van den Broek, S.-M. Kalisch, G.J.L. Wuite, R. Metzler
Facilitated diffusion with DNA coiling
Proc. Natl. Acad. Sci. U. S. A. 106:8204-8208 (2009)

J. van Mameren, M. Modesti R. Kanaar, C. Wyman, E.J.G. Peterman, G.J.L. Wuite
Counting RAD51 proteins disassembling from nucleoprotein filaments under tension
Nature 457, 745 - 748 (2009), doi: 10.1038/nature07581

W.H. Roos, G.J.L. Wuite
Nanoindentation studies reveal material properties of viruses
Advanced Materials  21 (10-11):1187-1192 (2009) doi: 10.1002/adma.200801709

D. Millo, A. Ranieri, P. Gross, H.K. Ly, M. Borsari, P. Hildebrandt, G.J.L. Wuite, C. Gooijer, G. van der Zwan
The electrochemical response of cytochrome c immobilized on smooth and roughened silver and gold surfaces chemically modified with 11-mercaptounodecanoic acid
Journal of Physical Chemistry 113 (7): 2861–2866 (2009)

R.T. Dame and C.J. Dorman (Eds.)
Bacterial Chromatin
Springer Publishing. 2010.

R.T. Dame
Ultrastructure and organization of bacterial chromosomes.
In: Bacterial Chromatin, Dame & Dorman Eds., Springer Publishing. 3-11, 2010

R.T. Dame and J. van Mameren
Optical tweezers: empowering biology with the force of light.
Biophotonics. 5, 34-37, 2009

Witte, S., Baclayon, M., Peterman, E. J., Toonen, R. F., Mansvelder, H. D. & Groot, M. L. Single-shot two-dimensional full-range optical coherence tomography achieved by dispersion control. Opt Express 17, 11335-11349, (2009).

Verbrugge, S., van den Wildenberg, S. M. & Peterman, E. J. Novel ways to determine kinesin-1's run length and randomness using fluorescence microscopy. Biophys J 97, 2287-2294, (2009).

Verbrugge, S., Lechner, B., Woehlke, G. & Peterman, E. J. Alternating-Site Mechanism of Kinesin-1 Characterized by Single-Molecule FRET Using Fluorescent ATP Analogues. Biophys J 97, 173-182, (2009).

Verbrugge, S., Lansky, Z. & Peterman, E. J. Kinesin's step dissected with single-motor FRET. Proc Natl Acad Sci U S A 106, 17741-17746, (2009).

Peterman, E. J. G. & Scholey, J. M. Mitotic Microtubule Crosslinkers: Insights from Mechanistic Studies. Curr Biol 19, R1089-R1094, (2009).

Calmat, S., Hendriks, J., van Heerikhuizen, H., Schmidt, C. F., van der Vies, S. M. & Peterman, E. J. Dissociation kinetics of the GroEL-gp31 chaperonin complex studied with Forster Resonance Energy Transfer. Biochemistry, (2009).